As has been pointed out elsewhere, Wallace and Gromit: The Curse of the Were-Rabbit definitely warrants inclusion in this list.

Other shouts: My Life as a Zucchini, Isle of Dogs, and though they probably don't count given their live action components, anything by Ray Harryhausen (Jason and the Argonauts, The Seventh Voyage of Sinbad, etc), as well as the original King Kong.

More recently, you may enjoy Marcel and the Shell with Shoes On. :)